Neuroscience

Articles and news from the latest research reports.

Posts tagged biology

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Imagine if we could under­stand the lan­guage two neu­rons use to com­mu­ni­cate. We might learn some­thing about how thoughts and con­scious­ness are formed. At the very least, our improved under­standing of neuron com­mu­ni­ca­tion would help biol­o­gists study the brain with more pre­ci­sion than ever before.Heather Clark, an asso­ciate pro­fessor of phar­ma­ceu­tical sci­ences at North­eastern Uni­ver­sity, has received a $300,000 Young Fac­ulty Award from the Defense Advanced Research Projects Agency to explore neural cell com­mu­ni­ca­tion using her exper­tise in nanosensors.

Imagine if we could under­stand the lan­guage two neu­rons use to com­mu­ni­cate. We might learn some­thing about how thoughts and con­scious­ness are formed. At the very least, our improved under­standing of neuron com­mu­ni­ca­tion would help biol­o­gists study the brain with more pre­ci­sion than ever before.

Heather Clark, an asso­ciate pro­fessor of phar­ma­ceu­tical sci­ences at North­eastern Uni­ver­sity, has received a $300,000 Young Fac­ulty Award from the Defense Advanced Research Projects Agency to explore neural cell com­mu­ni­ca­tion using her exper­tise in nanosensors.

Filed under science neuroscience brain psychology neuron biology nanosensors

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With his knack for knowing what stem cells want, Yoshiki Sasai has grown an eye and parts of a brain in a dish.
All it took to grow a retina, it turned out, were a few tweaks, such as a reduction in the concentration of growth factors and the addition of a standard cell-culture ingredient called Matrigel. The result closely mimics eye development in the embryo. By the sixth day in culture, the brain balls start sprouting balloon-like growths of retinal cells, which then collapse in on themselves to make the double-walled optic cups. Sasai’s team snip them off — “like taking an apple from a tree”, says Sasai — transfer them to a different culture and let them be. Two weeks later, the cups have formed all six layers of the retina, an architecture that resembles the eye of an 8-day-old mouse (which, at that age, is still blind). That the cells could drive themselves through this dramatic biomechanical process without surrounding tissues to support them stunned Sasai as much as anyone else. “When I saw it, I thought, ‘Oh my god.’ Shape, topology and size are all recapitulated,” he says. Carefully explaining the pun to come, he adds: “In English, when you are surprised, you say ‘eye-popping’ — so we really thought this was eye-popping.”

With his knack for knowing what stem cells want, Yoshiki Sasai has grown an eye and parts of a brain in a dish.

All it took to grow a retina, it turned out, were a few tweaks, such as a reduction in the concentration of growth factors and the addition of a standard cell-culture ingredient called Matrigel. The result closely mimics eye development in the embryo. By the sixth day in culture, the brain balls start sprouting balloon-like growths of retinal cells, which then collapse in on themselves to make the double-walled optic cups. Sasai’s team snip them off — “like taking an apple from a tree”, says Sasai — transfer them to a different culture and let them be. Two weeks later, the cups have formed all six layers of the retina, an architecture that resembles the eye of an 8-day-old mouse (which, at that age, is still blind). That the cells could drive themselves through this dramatic biomechanical process without surrounding tissues to support them stunned Sasai as much as anyone else. “When I saw it, I thought, ‘Oh my god.’ Shape, topology and size are all recapitulated,” he says. Carefully explaining the pun to come, he adds: “In English, when you are surprised, you say ‘eye-popping’ — so we really thought this was eye-popping.”

(Source: nature.com)

Filed under biology brain engineering neuroscience psychology science stem cells tissue retina

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The gears that help cells divide are coming into clearer focus. Researchers have used a new type of super-resolution microscopy to zoom in on centrosomes, which anchor the fibers that enable chromosomes to separate during cell division. Centrosomes have intrigued scientists since their discovery in the late 1800s, in part because cancer cells often amass extra copies of the structures. But they’re so tiny that they’re barely visible through traditional light microscopes, and researchers haven’t nailed down how they form and what role they play in cancer. So cell biologist David Glover of the University of Cambridge in the United Kingdom and his postdoc Jingyan Fu turned to three-dimensional structured illumination microscopy to provide sharper portraits of centrosomes and to pinpoint several proteins they harbor. Each centrosome consists of two cylindrical components called centrioles shrouded by a molecular cloud, which balloons when cells start the process of division. As the team reveals online today in Open Biology, many of the cloud proteins first gather on the centrioles, moving into the cloud once division begins. That’s the case with the protein Cnn (green), shown above close to the cylindrical centriole (top) and dispersed in the cloud (bottom, inset). With further research, scientists might be able to determine how different proteins interact to construct centrosomes. “We can put the molecular jigsaw together,” Glover says.

The gears that help cells divide are coming into clearer focus. Researchers have used a new type of super-resolution microscopy to zoom in on centrosomes, which anchor the fibers that enable chromosomes to separate during cell division. Centrosomes have intrigued scientists since their discovery in the late 1800s, in part because cancer cells often amass extra copies of the structures. But they’re so tiny that they’re barely visible through traditional light microscopes, and researchers haven’t nailed down how they form and what role they play in cancer. So cell biologist David Glover of the University of Cambridge in the United Kingdom and his postdoc Jingyan Fu turned to three-dimensional structured illumination microscopy to provide sharper portraits of centrosomes and to pinpoint several proteins they harbor. Each centrosome consists of two cylindrical components called centrioles shrouded by a molecular cloud, which balloons when cells start the process of division. As the team reveals online today in Open Biology, many of the cloud proteins first gather on the centrioles, moving into the cloud once division begins. That’s the case with the protein Cnn (green), shown above close to the cylindrical centriole (top) and dispersed in the cloud (bottom, inset). With further research, scientists might be able to determine how different proteins interact to construct centrosomes. “We can put the molecular jigsaw together,” Glover says.

Filed under microscopy science neuroscience biology psychology centrosomes cell division

42 notes

A species of rat has been discovered that cannot gnaw or chew and represents a new step in rodent evolution. The shrew-like animal, Paucidentomys vermidax, has fang-like upper incisors which are useless for gnawing and no back teeth. It lives exclusively on earthworms which it sucks out of the ground at the foot of the jungle with its long snout.

(Source: Daily Mail)

Filed under rodents evolution science biology neuroscience animals

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Making Sense out of the Biological Matrix of Bipolar Disorder

ScienceDaily (Aug. 20, 2012) — The more that we understand the brain, the more complex it becomes. The same can be said about the genetics and neurobiology of psychiatric disorders. For “Mendelian” disorders, like Huntington disease, mutation of a single gene predictably produces a single clinical disorder, following relatively simple genetic principals. Compared to Mendelian disorders, understanding bipolar disorder has been extremely challenging. Its biology is not well understood and its genetics are complex.

In a new paper, Dr. Inti Pedroso and colleagues utilize an integrative approach to probe the biology of bipolar disorder. They combined the results of three genome-wide association studies, which examined the association of common gene variants with bipolar disorder throughout the genome, and a study of gene expression patterns in post-mortem brain tissue from people who had been diagnosed with bipolar disorder. The findings were analyzed within the context of how brain proteins relate to each other based on the Human Protein Reference Database protein-protein interaction network.

"None of our research approaches provides us with sufficient information, by itself, to understand the neurobiology of psychiatric disorders. This innovative paper wrestles with this challenge in a creative way that helps us to move forward in thinking about the neurobiology of bipolar disorder," commented Dr. John Krystal, Editor of Biological Psychiatry.

Dr. Pedroso explained, “We combined information about genetic variation from thousands of cases and controls with brain gene expression data and information from protein databases to identify networks of genes and proteins in the brain that are key in the development of bipolar disorder.”

The analysis resulted in the ability to define risk gene variants that were deemed functional, by virtue of the association with changes in gene expression levels, and to group these functional gene variants in biologically meaningful pathways.

The results implicated genes involved in several neural signaling pathways, including the Notch and Wnt signaling pathways. These pathways are key processes in neurotransmission and brain development and these findings indicate they are also likely to be involved in causing this severe disorder. The authors noted that three features stand out among these genes: i) they localized to the human postsynaptic density, which is crucial for neuronal function; ii) their mouse knockouts present altered behavioral phenotypes; and iii) some are known targets of the pharmacological treatments for bipolar disorder.

Dr. Gerome Breen, senior author on the study and Senior Lecturer at King’s College London Institute of Psychiatry, said, “Our study provides some of the first evidence to show the biochemical and developmental processes involved in causing risk for developing this life-long and costly illness. We have highlighted potential new avenues for new drug treatments and intervention.”

Source: Science Daily

Filed under biology bipolar disorder brain genetics neuroscience psychology science genomics

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Scientists have demonstrated an automated system that uses artificial intelligence and cutting-edge image processing to rapidly examine large numbers of individual Caenorhabditis elegans, a species of nematode widely used in biological research. Beyond replacing existing manual examination steps using microfluidics and automated hardware, the system’s ability to detect subtle differences from worm-to-worm – without human intervention – can identify genetic mutations that might not have been detected otherwise.
By allowing thousands of worms to be examined autonomously in a fraction of the time required for conventional manual screening, the technique could change the way that high throughput genetic screening is carried out using C. elegans.
Hang Lu’s research team is studying genes that affect the formation and development of synapses in the worms, work that could have implications for understanding human brain development. The researchers use a model in which synapses of specific neurons are labeled by a fluorescent protein. Their research involves creating mutations in the genomes of thousands of worms and examining the resulting changes in the synapses. Mutant worms identified in this way are studied further to help understand what genes may have caused the changes in the synapses.

Scientists have demonstrated an automated system that uses artificial intelligence and cutting-edge image processing to rapidly examine large numbers of individual Caenorhabditis elegans, a species of nematode widely used in biological research. Beyond replacing existing manual examination steps using microfluidics and automated hardware, the system’s ability to detect subtle differences from worm-to-worm – without human intervention – can identify genetic mutations that might not have been detected otherwise.

By allowing thousands of worms to be examined autonomously in a fraction of the time required for conventional manual screening, the technique could change the way that high throughput genetic screening is carried out using C. elegans.

Hang Lu’s research team is studying genes that affect the formation and development of synapses in the worms, work that could have implications for understanding human brain development. The researchers use a model in which synapses of specific neurons are labeled by a fluorescent protein. Their research involves creating mutations in the genomes of thousands of worms and examining the resulting changes in the synapses. Mutant worms identified in this way are studied further to help understand what genes may have caused the changes in the synapses.

Filed under science neuroscience AI biology genetics brain mutations

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